{ "_id": "6a104e07acfb0bcc41ca08a7", "Type": "Package", "Package": "RcppTskit", "Title": "'R' Access to the 'tskit C' API", "Version": "0.3.0", "Date": "2026-03-01", "Authors@R": "c(\nperson(\"Gregor\", \"Gorjanc\", , \"gregor.gorjanc@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8008-2787\")),\nperson(\"Tskit Developers\", role = \"cph\",\ncomment = \"Authors of included tskit C library\")\n)", "Description": "'Tskit' enables efficient storage, manipulation, and\nanalysis of ancestral recombination graphs (ARGs) using\nsuccinct tree sequence encoding. The tree sequence encoding of\nan ARG is described in Wong et al. (2024)\n, while 'tskit' project is\ndescribed in Jeffrey et al. (2026)\n. See also \nfor project news, documentation, and tutorials. 'Tskit'\nprovides 'Python', 'C', and 'Rust' application programming\ninterfaces (APIs). The 'Python' API can be called from 'R' via\nthe 'reticulate' package to load and analyse tree sequences as\ndescribed at .\n'RcppTskit' provides 'R' access to the 'tskit C' API for cases\nwhere the 'reticulate' option is not optimal; for example,\nhigh-performance or low-level work with tree sequences.\nCurrently, 'RcppTskit' provides a limited set of functions\nbecause the 'Python' API and 'reticulate' already cover most\nneeds. The provided 'RcppTskit R' API mirrors the 'tskit\nPython' API, while the 'RcppTskit C++' API mirrors the 'tskit\nC' API. Users should explore the 'RcppTskit' help pages of 'R'\nfunctions, while developers should explore the\n'RcppTskit:::rtsk_*' low-level 'R' and 'C++'' functions.", "License": "MIT + file LICENSE", "URL": "https://github.com/HighlanderLab/RcppTskit", "BugReports": "https://github.com/HighlanderLab/RcppTskit/issues", "VignetteBuilder": "quarto", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-GB", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libpng-dev python3", "Repository": "https://highlanderlab.r-universe.dev", "Date/Publication": "2026-04-10 06:03:43 UTC", "RemoteUrl": "https://github.com/highlanderlab/RcppTskit", "RemoteRef": "HEAD", "RemoteSha": "45a46563597fa1b39015319b367c2d7ede0435ef", "RemoteSubdir": "RcppTskit", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-10 06:41:02 UTC", "User": "root" }, "Author": "Gregor Gorjanc [aut, cre, cph] (ORCID:\n),\nTskit Developers [cph] (Authors of included tskit C library)", "Maintainer": "Gregor Gorjanc ", 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